Run plague model simulation
Usage
run_plague_model(
scenario = "defaults",
years = 10,
timestep = c("weekly", "daily"),
include_humans = FALSE,
npop = 1,
contact_matrix = NULL,
n_particles = 100,
n_threads = 1,
seasonal = FALSE,
K_r = 2500,
K_h = 5000,
I_ini = 1,
seasonal_amplitude = 1,
...
)Arguments
- years
Number of years to simulate (default 10)
- timestep
Time step resolution: "weekly" or "daily" (default "weekly")
- include_humans
Logical, include human dynamics (only npop = 1 supported)
- npop
Number of populations (1 for single population, >1 for spatial)
- contact_matrix
Contact matrix for multi-population models (auto-generated if NULL and npop = 25)
- n_particles
Number of particles for stochastic models
- n_threads
Number of threads for parallel processing
- seasonal
Logical, include seasonal forcing
- ...
Additional parameters to override
- params
Parameter set name, file path, or list of parameters